If you need to install wordpress in a subfolder and activate permalink you need edit the file subfolder/.htaccess file as follow

<IfModule mod_rewrite.c>
RewriteEngine On
RewriteBase /subfolder/
RewriteRule ^index\.php$ - [L]
RewriteCond %{REQUEST_FILENAME} !-f
RewriteCond %{REQUEST_FILENAME} !-d
RewriteRule . /subfolder/index.php [L]

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